PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00034.80
Common NameJCGZ_07297, LOC105637770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 248aa    MW: 27573.4 Da    PI: 4.9056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00034.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1860110155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Jcr4S00034.80  60 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 110
                    68*****998.**********854...59*********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1260110IPR001471AP2/ERF domain
SMARTSM003807.2E-3661124IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2161119IPR016177DNA-binding domain
PROSITE profilePS5103223.01161118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3161119IPR001471AP2/ERF domain
PRINTSPR003674.0E-106273IPR001471AP2/ERF domain
CDDcd000181.93E-3162120No hitNo description
PRINTSPR003674.0E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPDTIRENSN WETESSINSS FPAPCSPSSS GLSTKPVRKS DSDENDQRKP KRARDSSKHP  60
VYRGVRMRTW GKWVSEIREP RKKNRIWLGT FSTPEMAARA HDVAALTIKG NSAILNFPEL  120
AGSLPRPASN SPRDVQAAAA KAASMDFHIS KDTQHDNNIN NASSSSTVTQ SSSSSTAEVT  180
SSPCDVATPE ELSQIVELPS LEMSFEKSPE LRDEFVFGDP WLYNPPWYED YMSESVINSG  240
FELLLWED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1562118360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076774.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A067KC060.0A0A067KC06_JATCU; Uncharacterized protein
STRINGPOPTR_0006s17670.17e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-59ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]